Fact Checked by Editorial Staff 
In general, a Limited Liability Company (LLC) in Nebraska does not pay any taxes like corporations and other business structures. It has a pass-through taxation instead of business or corporate tax. Besides, the LLC tax structure includes state and federal mandatory taxes. LLCs are required to choose the tax structure at the time of filing the company.
IRS (Internal Revenue Service) allows an LLC in Nebraska to choose its preferred classification of tax at the beginning of the LLC filing. For example, a single-member LLC is taxed as a sole proprietor, and a multi-member LLC is taxed as a partnership. As there is no fixed tax structure for LLCs, everyone certainly wants to opt for the most beneficial one. On this page, LLCBuddy editors shared all about the tax structure in Nebraska LLC.
How Does Taxation Work in a Nebraska LLC
For an LLC in Nebraska, the tax structure is very simple and flexible. First of all, every LLC has the advantage of a pass-through taxation. On the other hand, an LLC can choose the desired tax structure at the time of formation. There are two ways an LLC can be taxed,
As a Sole Proprietorship
A single-member LLC is usually considered a sole proprietorship company. Hence, by default, it is taxed as a sole proprietorship. A single-member LLC is also called a disregarded entity. Under the U.S. tax law, it is assumed that a single-member LLC is owned by an individual (& not by another LLC), so the U.S. tax law levies rules on it as a Sole Proprietor. A single-member LLC’s owner (Sole Proprietor) has to report all the income of the LLC via their own income tax return.
As mentioned earlier, the single owner of the LLC is treated as the Sole proprietor of the LLC & has to file the Self-Employment Tax on all of the LLC’s earnings. Nebraska does not levy State Income Tax, so a single-member LLC must file only the Federal Income Tax.
As a Partnership
Any LLC with more than one owner is referred to as a Multi-Member LLC & it is taxed as a partnership by default. Similar to the Single Owner or Single Member LLC, this LLC is also a pass-through entity. This means that the income of the LLC passes through the income of the members & they have to file taxes through their own earnings.
Partnership or Multi-Member LLC has to pay taxes similar to those of the Single-Member LLC. If the Partnership LLC is directly owned by individuals, it is exempt from the Franchise Tax. All the members of the Multi-Member LLC are liable to pay Self-Employment Tax & Federal Income Tax.
Pass-through Taxation for Nebraska LLC
A Limited Liability Company (LLC) is a form of business structure that consists of members and/or managers (owners). The biggest advantage of an LLC in Nebraska is the pass-through taxation. The limited liability company does not pay any federal income taxes based on the revenue of the company. Instead, the tax liability passes through to each member of the LLC. Furthermore, the members will have to pay individual income tax based on their income.
Both for a single-member LLC and a multi-member LLC in Nebraska, the tax burden passes through to the member(s). In other cases, if an LLC chooses to be taxed as a Corporation, the LLC will have to pay federal income tax based on its revenue and profit. There is no pass-through taxation for C-Corp and S-Corp.
Options to Change Default Tax Classification
The LLCs are categorized either as sole proprietorships or as partnerships, depending on the number of members the LLC has. This is the default tax classification applicable to LLCs. However, the LLCs have an option of changing the default classification & opting to register under the following categories for taxation purposes:
C-Corporation
An LLC can prefer to be treated as a C-corporation by filing Form 8832 (the Entity Classification Election Form) with the IRS. The C-corporation is a regular corporation that is subject to corporate taxes & it is not a pass-through entity.
An LLC taxed as a C-Corporation is not a pass-through entity. In a C-corporation, the members/shareholders/ owners are taxed separately. The shareholders of the C-corporation are taxed twice on the dividends that they earn. The dividends of the shareholders are taxed at the corporate level, with a Corporate Tax filed with Form 1120 & at a Shareholder level, an Income Tax filed with Form 1040. Shareholders are subject to Federal Income Tax.
S-Corporation
The S-Corporation is the most common type of corporate structure used by small businesses. It was created to provide corporations with limited liability protection while maintaining the benefits of being a separate legal entity. An LLC can prefer to be treated as an S-Corporation by filing Form 2553. S corporations are small business corporations that choose to pass through the corporate income, losses, deductions, & credits to the shareholders for the purposes of Federal Taxes.
An S-Corporation is similar to an LLC except that it is treated by the IRS as a corporation for tax purposes. S-Corps do pay corporate income taxes; however, they are still considered disregarded entities for federal tax purposes.
Like an LLC, an S-Corp reports its annual earnings on a separate Schedule E on the member’s personal account. An S-Corp is treated by the IRS much like a partnership for tax purposes. Unlike a Partnership, in an S Corporation, the shareholders are required to pay Federal self-employment tax on their share of the company’s profits.
LLC Taxes to be Paid in Nebraska
There are two main state taxes that an LLC has to pay to the Nebraska Department of Revenue:
State Income Tax
You yourself pay through the earnings while representing your LLC in Nebraska. These earnings get reflected in your personal Tax return & are further calculated at the time of paying the State Income Tax. All the employees you hire will also need to pay the Nebraska state income tax. The Standard Nebraska State Tax rate ranges from 2.46% to 6.48%, depending on how much you earn.
State Sales & Use Tax
The State Sales & Use tax rate in Nebraska is 5.5%. Some particular goods are also tax-exempted like the goods that are considered basic necessities. Other local taxing jurisdictions, such as cities and counties, may impose additional sales tax.
Franchise Tax
Nebraska levies a tax on certain businesses for the right to exist as a legal entity and do certain business in the state. LLCs in Nebraska are exempt from paying the franchise tax unless they file their taxes as corporations.
Federal Self-Employment Tax
Every individual in Nebraska who is earning profit out of the LLC has to pay the Federal Self-Employment Tax (also called the Social Security or Medicare Tax). The Federal Self-Employment Tax applies to all the earnings of an LLC member or manager. The Federal Self-Employment Tax rate in Nebraska is 15.3%. One is able to deduct your LLC’s expenses from the income earned; for that, you must calculate the Self-Employment Tax your LLC owes.
Federal Income Tax
This tax also applies to the earnings you make in your LLC. One is obliged to pay regular federal income tax on any earnings you take out from your LLC.
The Federal Income Tax Rate is built upon the earnings you make, the type of your LLC’s industry, the current income tax bracket that is applicable, deductions applicable, and your filing status. One only has to pay Federal income tax on profits you take out of the business, allowances, and certain deductions. This includes your tax-free amount, business expenses, as well as other deductions for areas such as retirement plans and healthcare.
Employee & Employer Taxes
Any LLC that has employees on the payroll is bound to pay different kinds of taxes that are applicable to all employees. The employee & employer tax implications are different from all the other types of taxes mentioned above. For instance, all employees of an LLC have to collect and retain the Payroll tax at the time of receiving the salary. Whether you withhold the federal tax and state tax or not, each employee has to file an individual tax return. The employer might also need to pay insurance for any employees if required.
Other Taxes
You may be liable to pay certain other taxes and duties, depending on your type of industry. For example, if you are a gasoline seller, then you may need to pay a tax on any fuel you sell. Similarly, if you import or export goods, you may need to pay certain kinds of duties.
Classification of Nebraska LLC Taxes
An LLC is considered a Pass-through Entity because it allows the income to pass through & become self-employment income. The members of the LLC have to pay Self-employment tax or Self-Employment Taxes on any income they earn through the LLC. The LLC has to pay Franchise Tax on its income. In addition to the Self-employment tax, there are some other requirements that an LLC has to consider, such as:
- Franchise Tax – Franchise tax applies to or levies upon LLCs, C-corporations, & S-corporations. Sole Proprietorship & Partnerships (directly owned by individuals) are exempted from the Franchise Tax. This tax is to be paid to the office of the Comptroller of Public Accounts.
- Federal Tax Identification Number – An LLC with employees must obtain a Federal Tax Identification Number. Nebraska does not have a separate State Tax Identification number.
- State Employer Taxes – If an LLC has employees on the payroll, it must pay state employer taxes in Nebraska. These taxes are handled through the Nebraska Workforce Commission.
- Franchise Tax Report – In Nebraska, the LLCs do not file an annual report with the Secretary of State; instead, it is submitted in the form of a Franchise Tax Report with the Nebraska Department of Revenue.
Federal Tax Classifications
When LLCs were recognized as one of the types of Business Corporations, the IRS did not create a new tax classification just for the LLC. LLCs were allowed to choose from the current tax classifications.
Choosing a Classification for Your LLC
In terms of owners’ protection against liability, perpetual existence, & savings in Taxation, Both LLCs (Limited Liability Companies) & Corporations are very much alike. However, with regard to formalities, Taxation, & capital, LLCs & Corporations differ in Nebraska.
Liabilities
Both LLCs and Corporations provide liability protection to their owners. The LLC provides protection against inside liability (towards the employee) & outside liability (towards the creditor). The Corporation usually provides only the inside liability.
Tax Classification Flexibility
For taxation purposes, an LLC has a choice of being treated as a sole proprietorship, Partnership, C-corporation, or S-corporation. A corporation can choose to be treated only as C or S Corporation.
Taxation
As mentioned earlier, the LLC can choose to be treated as a corporation; the Corporation does not have the option of being treated as an LLC. A Nebraska LLC is subject to Franchise tax, Federal Income Tax, Sales & Use Taxes & State Employment Taxes (for LLCs that have employees)
A regular corporation or a C-Corporation is subject to corporate tax, which can be filed through Form 1120 every year. The shareholders have to pay the income tax only when they receive dividends from the Corporation. These dividends are taxed twice at the corporate level (on a corporate form)& at the shareholder level (on shareholder form).
An S-Corporation in an LLC is not subject to corporate taxes. But the shareholders are subjected to Taxation – even if they do not receive any dividends. A member of a Nebraska S-corporation has to pay Federal Self-Employment Tax only on his salary; any other profits that he makes through the LLC are not subject to the 15.3% Self-Employment Tax.
Classification of LLC Taxes – At a Glance
| Points of Difference | LLC | S- Corporation | C-Corporation | Sole Proprietorship |
| Taxation | As an LLC, by default, there is no tax levied at the entity level. The members’ income or even the loss is passed through to members or owners. | Similar to LLC, no tax is levied on an S-Corporation at the entity level. The members’ income or even the loss is passed through to the members or owners. | The C-Corporation is often taxed at the entity level. The Dividends are taxed at the shareholders’ level. | The sole proprietorship as an entity is not taxable. The Sole Proprietor pays taxes as an Individual. |
| Double Taxation | The LLC does not have Double Taxation | There is no Double Taxation in S-Corporation | There is Double Taxation in C-Corporations, only when the Shareholders earn in the form of dividends. | No Double Taxation in a sole proprietorship. |
| Self-Employment Tax | The net income of the members or owners is subject to self-employment tax. | The salaries of the shareholder are subject to self-employment tax, but any other profits that the shareholder makes are not subject to the employment tax. | The C-Corporation is subject to self-employment tax. | The sole proprietorship is subject to self-employment tax |
| Pass-Through Income/Loss | An LLC is often referred to as a Pass-through entity because its income passes through/ passes to its members. | Yes, An S Corporation is a Pass-through Entity. | No, A C-Corporation is not a Pass-through Entity. | Yes, A sole proprietorship is a Pass-through Entity. |
FAQ
C-Corporation. It taxes the dividends of the shareholders at the corporate level as well as at the individual level.
An LLC is often referred to as a pass-through entity because the income or the assets pass through the members or owners of the LLC.
The LLCs have two default classifications. It can be termed as a single-member LLC or a multi-member LLC.
When choosing a different classification for taxation, it is essential to understand the liabilities & taxes applicable in that classification.
How Do LLCs Pay Taxes in Nebraska
One of the key benefits of forming an LLC is the flexibility in how business profits are taxed. By default, an LLC is considered a pass-through entity for tax purposes, which means that the profits and losses of the business pass through to the individual tax returns of the LLC’s owners. This pass-through taxation allows business owners to avoid the double taxation that corporations can face, where profits are taxed both at the corporate level and again when distributed to shareholders.
In Nebraska, LLCs have the option to choose how they want to be taxed for state income tax purposes. By default, Nebraska LLCs are treated as pass-through entities, similar to federal taxation. This means that the business profits and losses are reported on the individual tax returns of the LLC’s owners. However, LLCs in Nebraska also have the option to elect to be taxed as a corporation for state income tax purposes. If this option is chosen, the LLC would be subject to corporate income tax rates rather than the individual income tax rates of its owners.
In addition to income taxes, LLCs in Nebraska are also required to pay certain other taxes depending on the nature of their business activities. For example, LLCs that have employees are required to pay state payroll taxes and may be subject to unemployment insurance taxes. Depending on the industry in which the LLC operates, there may also be additional state taxes or fees that need to be paid.
It is important for LLCs in Nebraska to keep accurate records of their income, expenses, and other financial transactions to ensure that they are staying compliant with state tax laws. Failing to properly report and pay taxes can result in penalties and interest charges, which can add up quickly and impact the financial health of the business.
Overall, understanding how LLCs pay taxes in Nebraska is essential for business owners to effectively manage their finances and ensure compliance with state tax laws. By taking the time to educate themselves on the tax requirements for LLCs in Nebraska, business owners can avoid costly mistakes and maintain a strong financial foundation for their businesses.
In Conclusion
Every Tax classification has its own set of benefits & restrictions. Every state will have different taxation rules for each of the categories of business corporations. Depending on the objective of formation of the business entity (Eg, to avoid dual Taxation- one can choose S Corporation, for more flexibility, one can choose the LLC format). It is essential to understand the taxing structure of each country & each Classification to decide how you wish to treat your LLC.